If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ), 'gf_id' => 'HOM05D000708', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000708' ), 'data_identifier' => 'HOM05D000708', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000708', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '812', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36220' => 'bna', 'A05p02380' => 'bna', 'A05p31560' => 'bna', 'A05p31580' => 'bna', 'A05p38820' => 'bna', 'A06p43170' => 'bna', 'A09p24370' => 'bna', 'A09p50270' => 'bna', 'Aa31LG10G12210' => 'aar', 'Aa31LG1G23640' => 'aar', 'Aa31LG3G2900' => 'aar', 'Aa31LG8G5020' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2421' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4562' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5278' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2672' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.527' => 'aag', 'Actinidia12312' => 'ach', 'Actinidia12313' => 'ach', 'Actinidia17120' => 'ach', 'Actinidia17232' => 'ach', 'Actinidia19925' => 'ach', 'Actinidia19926' => 'ach', 'Actinidia28190' => 'ach', 'Actinidia31952' => 'ach', 'Actinidia32268' => 'ach', 'Actinidia33239' => 'ach', 'Actinidia39210' => 'ach', 'Actinidia39211' => 'ach', 'Ah.02g129280' => 'amhyb', 'Ah.03g134570' => 'amhyb', 'Ah.06g182550' => 'amhyb', 'Ah.13g076520' => 'amhyb', 'Ah.13g077060' => 'amhyb', 'AL3G21650' => 'aly', 'AL3G31360' => 'aly', 'AL3G31370' => 'aly', 'AL4G39740' => 'aly', 'AL5G13080' => 'aly', 'AL5G38910' => 'aly', 'Aqoxy1G00320' => 'aox', 'Aqoxy3G03547' => 'aox', 'Aqoxy5G03878' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0E8WJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1WCV8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2DHH38' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51RB73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM2ILG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D2WYYW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNZ7AA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HQGJ2Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JC3SS3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHXL53' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RMH1PV' => 'arhy', 'AT2G03360' => 'ath', 'AT2G03370' => 'ath', 'AT2G41640' => 'ath', 'AT3G10320' => 'ath', 'AT3G18170' => 'ath', 'AT3G18180' => 'ath', 'AT3G57380' => 'ath', 'ATR0326G076' => 'atr', 'ATR0681G005' => 'atr', 'ATR0691G091' => 'atr', 'ATR0691G235' => 'atr', 'ATR0782G162' => 'atr', 'ATR0950G006' => 'atr', 'ATR0950G010' => 'atr', 'Atru.chr1.1138' => 'acertr', 'Atru.chr11.1695' => 'acertr', 'Atru.chr11.1697' => 'acertr', 'Atru.chr11.1699' => 'acertr', 'Atru.chr9.936' => 'acertr', 'Atru.chr9.937' => 'acertr', 'Atru.chr9.938' => 'acertr', 'AUR62001025' => 'cqu', 'AUR62005869' => 'cqu', 'AUR62005871' => 'cqu', 'AUR62015831' => 'cqu', 'AUR62020388' => 'cqu', 'AUR62024475' => 'cqu', 'AUR62024514' => 'cqu', 'AUR62026064' => 'cqu', 'AUR62026105' => 'cqu', 'AUR62032861' => 'cqu', 'AUR62032863' => 'cqu', 'BcaB04g20788' => 'bca', 'BcaB07g30673' => 'bca', 'BcaB07g30676' => 'bca', 'BcaC03g16022' => 'bca', 'BcaC04g21491' => 'bca', 'BcaC05g28657' => 'bca', 'BcaC05g28659' => 'bca', 'BcaC05g29477' => 'bca', 'BcaC06g31186' => 'bca', 'BcaC06g34002' => 'bca', 'BcaC07g40391' => 'bca', 'BcaC09g48775' => 'bca', 'BcaNung04065' => 'bca', 'BcaNung05740' => 'bca', 'BcaNung06564' => 'bca', 'BolC1t04566H' => 'bol', 'BolC4t21922H' => 'bol', 'BolC5t33501H' => 'bol', 'BolC5t34440H' => 'bol', 'BolC7t43897H' => 'bol', 'BolC8t50889H' => 'bol', 'BolC9t55976H' => 'bol', 'BraA01t03697Z' => 'bra', 'BraA05t19232Z' => 'bra', 'BraA05t21991Z' => 'bra', 'BraA05t22673Z' => 'bra', 'BraA06t27205Z' => 'bra', 'BraA09t38030Z' => 'bra', 'BraA09t40477Z' => 'bra', 'BraA09t40478Z' => 'bra', 'C01p46050' => 'bna', 'C04p02820' => 'bna', 'C05p47870' => 'bna', 'C05p47900' => 'bna', 'C05p57850' => 'bna', 'C07p33830' => 'bna', 'C08p32780' => 'bna', 'C09p31200' => 'bna', 'CAN.G1129.37' => 'can', 'CAN.G1129.38' => 'can', 'CAN.G1129.39' => 'can', 'CAN.G1340.16' => 'can', 'CAN.G1665.4' => 'can', 'CAN.G676.18' => 'can', 'CANSAT11G0992' => 'cansat', 'CANSAT25G2746' => 'cansat', 'CANSAT80G0738' => 'cansat', 'CANSAT80G0946' => 'cansat', 'CANSAT80G2754' => 'cansat', 'CARHR084800' => 'chi', 'CARHR093500' => 'chi', 'CARHR093510' => 'chi', 'CARHR136730' => 'chi', 'CARHR145710' => 'chi', 'CARHR167570' => 'chi', 'Carub.0003s0950' => 'cru', 'Carub.0003s1792' => 'cru', 'Carub.0003s1793' => 'cru', 'Carub.0004s2390' => 'cru', 'Carub.0005s0234' => 'cru', 'Carub.0005s2422' => 'cru', 'Ca_08440_v3' => 'car', 'Ca_17225_v3' => 'car', 'Ca_17433_v3' => 'car', 'Ca_29798_v3' => 'car', 'CBR_g57821' => 'cbr', 'Cc00_g29990' => 'ccan', 'Cc04_g06720' => 'ccan', 'Cc04_g06730' => 'ccan', 'Cc05_g14100' => 'ccan', 'Cc05_g14110' => 'ccan', 'Cc06_g17740' => 'ccan', 'CDE06G2295' => 'cde', 'CDE06G2356' => 'cde', 'CDE08G1646' => 'cde', 'Cfa008913' => 'cfa', 'Cfa016795' => 'cfa', 'Cfa019712' => 'cfa', 'Cfa019713' => 'cfa', 'Cfa020303' => 'cfa', 'Cfa021093' => 'cfa', 'Ciclev10004678m.g' => 'ccl', 'Ciclev10010148m.g' => 'ccl', 'Ciclev10010510m.g' => 'ccl', 'Ciclev10010569m.g' => 'ccl', 'Ciclev10010793m.g' => 'ccl', 'Ciclev10033317m.g' => 'ccl', 'Ciclev10033490m.g' => 'ccl', 'CiPaw.05G128300' => 'cil', 'CiPaw.09G039500' => 'cil', 'CiPaw.10G034400' => 'cil', 'CiPaw.11G192800' => 'cil', 'CiPaw.15G138200' => 'cil', 'ClCG04G003530' => 'cla', 'ClCG04G010800' => 'cla', 'ClCG10G005240' => 'cla', 'COL.COLO4_03484' => 'col', 'COL.COLO4_09702' => 'col', 'COL.COLO4_19662' => 'col', 'COL.COLO4_20031' => 'col', 'COL.COLO4_27939' => 'col', 'COL.COLO4_27940' => 'col', 'COL.COLO4_33953' => 'col', 'COL.COLO4_33954' => 'col', 'Cpa.g.sc1.81' => 'cpa', 'Cpa.g.sc3.447' => 'cpa', 'Cpa.g.sc3.448' => 'cpa', 'Cpa.g.sc329.1' => 'cpa', 'CsaV3_3G004940' => 'csa', 'CsaV3_4G013390' => 'csa', 'CsaV3_4G028900' => 'csa', 'CSS0000807' => 'camsi', 'CSS0003726' => 'camsi', 'CSS0005153' => 'camsi', 'CSS0009550' => 'camsi', 'CSS0019610' => 'camsi', 'CSS0021004' => 'camsi', 'CSS0022630' => 'camsi', 'CSS0029383' => 'camsi', 'CSS0044933' => 'camsi', 'CSS0045267' => 'camsi', 'CSS0045640' => 'camsi', 'CSS0045940' => 'camsi', 'CSS0048104' => 'camsi', 'DCAR_006235' => 'dca', 'DCAR_013193' => 'dca', 'DCAR_013607' => 'dca', 'DCAR_015160' => 'dca', 'DCAR_015161' => 'dca', 'DCAR_015162' => 'dca', 'DCAR_020501' => 'dca', 'DCAR_022587' => 'dca', 'Dinv10411' => 'din', 'Dinv10412' => 'din', 'Dinv12403' => 'din', 'Dinv12404' => 'din', 'Dinv13556' => 'din', 'Dinv16699' => 'din', 'Dinv34110' => 'din', 'Dinv39628' => 'din', 'Dinv40785' => 'din', 'Duzib084G0145' => 'dzi', 'Duzib093G1872' => 'dzi', 'Duzib106G0357' => 'dzi', 'Duzib128G1089' => 'dzi', 'Duzib205G1308' => 'dzi', 'Duzib205G1481' => 'dzi', 'Duzib205G1828' => 'dzi', 'Duzib213G0623' => 'dzi', 'Duzib251G0817' => 'dzi', 'ECA233G1069' => 'eca', 'ECA233G2729' => 'eca', 'ECA233G3968' => 'eca', 'ECA236G1592' => 'eca', 'ECA240G0154' => 'eca', 'ECA240G4124' => 'eca', 'ECA240G4148' => 'eca', 'ECA247G0717' => 'eca', 'ECA248G0125' => 'eca', 'ECA248G3025' => 'eca', 'EL10Ac3g07108' => 'bvu', 'EL10Ac3g07141' => 'bvu', 'EL10Ac4g07755' => 'bvu', 'EL10Ac4g07756' => 'bvu', 'EL10Ac4g09115' => 'bvu', 'EL10Ac6g13285' => 'bvu', 'EL10Ac6g13286' => 'bvu', 'EL10Ac6g13288' => 'bvu', 'Eucgr.A02332' => 'egr', 'Eucgr.A02333' => 'egr', 'Eucgr.B00844' => 'egr', 'Eucgr.B03184' => 'egr', 'Eucgr.D00867' => 'egr', 'Eucgr.F02597' => 'egr', 'Eucgr.F03488' => 'egr', 'Eucgr.F03489' => 'egr', 'Eucgr.G02466' => 'egr', 'Eucgr.H03823' => 'egr', 'Eucgr.H04827' => 'egr', 'Eucgr.K01068' => 'egr', 'Eucgr.K02245' => 'egr', 'Eucgr.L00065' => 'egr', 'Eucgr.L03246' => 'egr', 'FAN02G0447' => 'fan', 'FAN05G0687' => 'fan', 'FAN05G3355' => 'fan', 'FAN07G0999' => 'fan', 'FAN07G1970' => 'fan', 'FAN08G2246' => 'fan', 'FAN08G3089' => 'fan', 'FAN11G1749' => 'fan', 'FAN12G1078' => 'fan', 'FAN12G3328' => 'fan', 'FAN13G2459' => 'fan', 'FAN13G2678' => 'fan', 'FAN14G0120' => 'fan', 'FAN14G0191' => 'fan', 'FAN14G3446' => 'fan', 'FAN16G0482' => 'fan', 'FAN17G0789' => 'fan', 'FAN17G1595' => 'fan', 'FAN17G2855' => 'fan', 'FAN18G2194' => 'fan', 'FAN18G2744' => 'fan', 'FvH4_3g23260' => 'fve', 'FvH4_4g30540' => 'fve', 'FvH4_4g30550' => 'fve', 'FvH4_4g30551' => 'fve', 'FvH4_5g16870' => 'fve', 'FvH4_5g16880' => 'fve', 'FvH4_6g19650' => 'fve', 'FvH4_6g23970' => 'fve', 'FvH4_6g24320' => 'fve', 'Glyma.02G113200' => 'gma', 'Glyma.03G134800' => 'gma', 'Glyma.05G242900' => 'gma', 'Glyma.08G050300' => 'gma', 'Glyma.19G137400' => 'gma', 'Gohir.A01G083100' => 'ghi', 'Gohir.A02G108505' => 'ghi', 'Gohir.A03G102800' => 'ghi', 'Gohir.A09G050700' => 'ghi', 'Gohir.A09G050800' => 'ghi', 'Gohir.A09G051000' => 'ghi', 'Gohir.A09G121700' => 'ghi', 'Gohir.A12G267400' => 'ghi', 'Gohir.A13G079700' => 'ghi', 'Gohir.D01G069600' => 'ghi', 'Gohir.D03G069705' => 'ghi', 'Gohir.D09G051700' => 'ghi', 'Gohir.D09G051800' => 'ghi', 'Gohir.D09G052000' => 'ghi', 'Gohir.D09G052100' => 'ghi', 'Gohir.D09G117900' => 'ghi', 'Gohir.D12G267900' => 'ghi', 'Gohir.D13G079400' => 'ghi', 'Gorai.002G092000' => 'gra', 'Gorai.003G090500' => 'gra', 'Gorai.005G143500' => 'gra', 'Gorai.006G057500' => 'gra', 'Gorai.006G057600' => 'gra', 'Gorai.006G057700' => 'gra', 'Gorai.006G057800' => 'gra', 'Gorai.006G136200' => 'gra', 'Gorai.008G287900' => 'gra', 'Gorai.013G090800' => 'gra', 'GSVIVG01008368001' => 'vvi', 'GSVIVG01010089001' => 'vvi', 'GSVIVG01033248001' => 'vvi', 'GSVIVG01037699001' => 'vvi', 'HanXRQChr01g0025801' => 'han', 'HanXRQChr08g0229621' => 'han', 'HanXRQChr10g0299611' => 'han', 'HanXRQChr13g0396461' => 'han', 'HanXRQChr13g0408081' => 'han', 'HanXRQChr13g0408101' => 'han', 'HanXRQChr13g0408551' => 'han', 'Haze_09718' => 'cav', 'Haze_11938' => 'cav', 'Haze_11939' => 'cav', 'Haze_18783' => 'cav', 'Haze_19823' => 'cav', 'Haze_19828' => 'cav', 'Hma1.2p1_0036F.1_g023280' => 'hma', 'Hma1.2p1_0036F.1_g023290' => 'hma', 'Hma1.2p1_0036F.1_g023300' => 'hma', 'Hma1.2p1_0036F.1_g023310' => 'hma', 'Hma1.2p1_0351F.1_g132840' => 'hma', 'Hma1.2p1_0354F.1_g133670' => 'hma', 'Hma1.2p1_0660F.1_g197720' => 'hma', 'Hma1.2p1_0788F.1_g218050' => 'hma', 'Hma1.2p1_2862F.1_g329580' => 'hma', 'Hma1.2p1_3078F.1_g332410' => 'hma', 'HPP92_002484' => 'vpl', 'HPP92_002968' => 'vpl', 'HPP92_004869' => 'vpl', 'HPP92_004889' => 'vpl', 'HPP92_004890' => 'vpl', 'HPP92_012084' => 'vpl', 'HPP92_012085' => 'vpl', 'HPP92_020140' => 'vpl', 'HPP92_025060' => 'vpl', 'Hund19130' => 'sun', 'Hund19143' => 'sun', 'Hund20477' => 'sun', 'Hund20480' => 'sun', 'Hund23220' => 'sun', 'Hund23221' => 'sun', 'Hund24691' => 'sun', 'Hund25511' => 'sun', 'Hund29935' => 'sun', 'Lalb_Chr01g0017371' => 'lal', 'Lalb_Chr05g0221931' => 'lal', 'Lalb_Chr09g0330621' => 'lal', 'Lalb_Chr20g0110621' => 'lal', 'Lalb_Chr25g0287251' => 'lal', 'Lj1g0006408' => 'lja', 'Lj2g0015813' => 'lja', 'Lj4g0008417' => 'lja', 'Lj5C153T12' => 'lonja', 'Lj8A171G41' => 'lonja', 'Lj8A171T46' => 'lonja', 'Lj8C171T12' => 'lonja', 'Lj9P422T35' => 'lonja', 'Lj9P422T41' => 'lonja', 'Lju124C45T5' => 'lonja', 'Lsat_1_v5_gn_3_58921' => 'lsa', 'Lsat_1_v5_gn_3_67381' => 'lsa', 'Lsat_1_v5_gn_4_14441' => 'lsa', 'Lsat_1_v5_gn_5_161220' => 'lsa', 'Lsat_1_v5_gn_8_960' => 'lsa', 'Lsat_1_v5_gn_9_31341' => 'lsa', 'Lsat_1_v5_gn_9_92441' => 'lsa', 'Lsat_1_v5_gn_9_92461' => 'lsa', 'Lsat_1_v5_gn_9_92580' => 'lsa', 'Lsat_1_v5_gn_9_92641' => 'lsa', 'Manes.04G056980' => 'mes', 'Manes.05G107300' => 'mes', 'Manes.05G107400' => 'mes', 'Manes.08G052900' => 'mes', 'Mapoly0004s0216' => 'mpo', 'Mapoly0053s0060' => 'mpo', 'Mapoly0109s0006' => 'mpo', 'MBI07_g01736_MAGBIO' => 'mbi', 'MBI07_g19550_MAGBIO' => 'mbi', 'MBI16_g29819_MAGBIO' => 'mbi', 'MBI17_g16496_MAGBIO' => 'mbi', 'MBI17_g16497_MAGBIO' => 'mbi', 'MBI17_g35866_MAGBIO' => 'mbi', 'MBI19_g42107_MAGBIO' => 'mbi', 'MD00G1122300' => 'mdo', 'MD00G1177600' => 'mdo', 'MD00G1177700' => 'mdo', 'MD03G1195900' => 'mdo', 'MD06G1222600' => 'mdo', 'MD06G1222700' => 'mdo', 'MD12G1075400' => 'mdo', 'MD12G1075900' => 'mdo', 'MD12G1211700' => 'mdo', 'MD13G1066400' => 'mdo', 'MD13G1066500' => 'mdo', 'MD14G1073900' => 'mdo', 'MD14G1074100' => 'mdo', 'MD14G1074200' => 'mdo', 'MD14G1074300' => 'mdo', 'MD16G1065500' => 'mdo', 'MD16G1065600' => 'mdo', 'Medtr5g011170' => 'mtr', 'Medtr5g043220' => 'mtr', 'Medtr5g043230' => 'mtr', 'Medtr7g091270' => 'mtr', 'Medtr7g091280' => 'mtr', 'Medtr8g106640' => 'mtr', 'Medtr8g106650' => 'mtr', 'MELO3C014192.2' => 'cme', 'MELO3C019188.2' => 'cme', 'MELO3C032295.2' => 'cme', 'Migut.D01436' => 'egut', 'Migut.D01438' => 'egut', 'Migut.D01439' => 'egut', 'Migut.D01468' => 'egut', 'Migut.I00410' => 'egut', 'Migut.I00415' => 'egut', 'Migut.I00416' => 'egut', 'Migut.I00418' => 'egut', 'Migut.J01741' => 'egut', 'Migut.M01728' => 'egut', 'Migut.M01729' => 'egut', 'Migut.M01730' => 'egut', 'MSTRG.19851' => 'ama', 'MSTRG.6417' => 'ama', 'MSTRG.6945' => 'ama', 'MSTRG.6946' => 'ama', 'MSTRG.9282' => 'ama', 'Nitab4.5_0000334g0210' => 'nta', 'Nitab4.5_0000364g0040' => 'nta', 'Nitab4.5_0001456g0020' => 'nta', 'Nitab4.5_0003307g0040' => 'nta', 'Nitab4.5_0005241g0060' => 'nta', 'Nitab4.5_0005692g0020' => 'nta', 'Nitab4.5_0007721g0010' => 'nta', 'Nitab4.5_0012330g0010' => 'nta', 'Nn1g03447' => 'nnu', 'Nn1g04572' => 'nnu', 'Nn1g04573' => 'nnu', 'Nn1g07235' => 'nnu', 'Nn2g15173' => 'nnu', 'Nn3g18003' => 'nnu', 'Nn4g23318' => 'nnu', 'Nn4g24021' => 'nnu', 'Nn5g30779' => 'nnu', 'Nn7g36346' => 'nnu', 'Oeu008013.1' => 'oeu', 'Oeu013127.1' => 'oeu', 'Oeu013131.1' => 'oeu', 'Oeu014374.1' => 'oeu', 'Oeu023113.2' => 'oeu', 'Oeu026401.1' => 'oeu', 'Oeu026403.1' => 'oeu', 'Oeu041170.1' => 'oeu', 'Oeu041171.2' => 'oeu', 'Oeu055189.1' => 'oeu', 'Oeu062944.1' => 'oeu', 'Os01g0118400' => 'osa', 'Os01g0118600' => 'osa', 'Os01g0118700' => 'osa', 'Os01g0119000' => 'osa', 'Os01g0119100' => 'osa', 'Os01g0498300' => 'osa', 'Os01g0956200' => 'osa', 'Os02g0135500' => 'osa', 'Os02g0327700' => 'osa', 'Os02g0329800' => 'osa', 'Os02g0330200' => 'osa', 'Os02g0331200' => 'osa', 'Os03g0567600' => 'osa', 'Os04g0196600' => 'osa', 'Os05g0391600' => 'osa', 'Os06g0246400' => 'osa', 'Os06g0311000' => 'osa', 'Os06g0470000' => 'osa', 'Os06g0475400' => 'osa', 'Os06g0707000' => 'osa', 'Os06g0707200' => 'osa', 'Os07g0657400' => 'osa', 'Os08g0446550' => 'osa', 'Os10g0492200' => 'osa', 'Os11g0575500' => 'osa', 'Os12g0238900' => 'osa', 'Peaxi162Scf00109g00144' => 'pax', 'Peaxi162Scf00130g00521' => 'pax', 'Peaxi162Scf00364g00118' => 'pax', 'Peaxi162Scf00683g00236' => 'pax', 'Peaxi162Scf00683g00249' => 'pax', 'PGR004G1001' => 'pgr', 'PGR016G0002' => 'pgr', 'PGR031G0018' => 'pgr', 'PGR044G1263' => 'pgr', 'PGR083G0025' => 'pgr', 'PGR102G1918' => 'pgr', 'PGR119G0730' => 'pgr', 'PGSC0003DMG400005663' => 'stu', 'PGSC0003DMG400005664' => 'stu', 'PGSC0003DMG400023731' => 'stu', 'PGSC0003DMG400027288' => 'stu', 'PGSC0003DMG400028330' => 'stu', 'Phvul.001G130200' => 'pvu', 'Phvul.002G326500' => 'pvu', 'Potri.006G048500' => 'ptr', 'Potri.008G092700' => 'ptr', 'Potri.010G162100' => 'ptr', 'Potri.010G162200' => 'ptr', 'Potri.012G051500' => 'ptr', 'Potri.015G042200' => 'ptr', 'Potri.015G042300' => 'ptr', 'Potri.016G057000' => 'ptr', 'Pp3c10_25730' => 'ppa', 'Pp3c5_5440' => 'ppa', 'Prupe.1G281500' => 'ppe', 'Prupe.1G281600' => 'ppe', 'Prupe.4G220000' => 'ppe', 'Prupe.5G227200' => 'ppe', 'Prupe.5G227600' => 'ppe', 'Prupe.7G055600' => 'ppe', 'Prupe.7G055700' => 'ppe', 'Psat0s2685g0040' => 'psa', 'Psat0s287g0080' => 'psa', 'Psat3g074000' => 'psa', 'Psat6g093600' => 'psa', 'Psat7g002440' => 'psa', 'PSO017G0137' => 'pso', 'PSO017G0660' => 'pso', 'PSO017G2239' => 'pso', 'PSO017G2641' => 'pso', 'PSO017G3068' => 'pso', 'PSO017G4147' => 'pso', 'PSO017G6557' => 'pso', 'PSO017G6881' => 'pso', 'PSO339G5280' => 'pso', 'PSO349G0213' => 'pso', 'PSO384G3683' => 'pso', 'PSO478G0647' => 'pso', 'PSO478G1536' => 'pso', 'PSO478G3187' => 'pso', 'PSO478G3756' => 'pso', 'PSO541G2789' => 'pso', 'PSO541G3196' => 'pso', 'PSO541G3418' => 'pso', 'PSO591G0111' => 'pso', 'PSO591G0345' => 'pso', 'PSO675G0106' => 'pso', 'PSO675G5618' => 'pso', 'PSO675G7752' => 'pso', 'PSO832G2820' => 'pso', 'QL03p070072' => 'qlo', 'QL03p070084' => 'qlo', 'QL03p070229' => 'qlo', 'QL03p070264' => 'qlo', 'QL03p070321' => 'qlo', 'QL03p070332' => 'qlo', 'QL03p070610' => 'qlo', 'QL03p070703' => 'qlo', 'QL07p002654' => 'qlo', 'QL08p006912' => 'qlo', 'QL09p024253' => 'qlo', 'QL10p027198' => 'qlo', 'QL10p027230' => 'qlo', 'RcHm_v2.0_Chr3g0483201' => 'rch', 'RcHm_v2.0_Chr3g0483211' => 'rch', 'RcHm_v2.0_Chr3g0483241' => 'rch', 'RcHm_v2.0_Chr4g0438911' => 'rch', 'RcHm_v2.0_Chr4g0438921' => 'rch', 'RcHm_v2.0_Chr4g0438931' => 'rch', 'RcHm_v2.0_Chr5g0040951' => 'rch', 'RcHm_v2.0_Chr7g0179171' => 'rch', 'RcHm_v2.0_Chr7g0179181' => 'rch', 'RcHm_v2.0_Chr7g0179191' => 'rch', 'RcHm_v2.0_Chr7g0179201' => 'rch', 'Rhsim04G0102800' => 'rsi', 'Rhsim04G0103100' => 'rsi', 'Rhsim04G0103200' => 'rsi', 'Rhsim06G0220500' => 'rsi', 'Rhsim06G0220600' => 'rsi', 'Rhsim06G0220700' => 'rsi', 'Rhsim06G0220800' => 'rsi', 'Rhsim06G0220900' => 'rsi', 'Rhsim06G0221100' => 'rsi', 'Rhsim06G0221300' => 'rsi', 'Rhsim06G0221400' => 'rsi', 'Rhsim06G0221500' => 'rsi', 'Rhsim06G0221600' => 'rsi', 'Rhsim06G0221700' => 'rsi', 'Rhsim06G0221800' => 'rsi', 'Rhsim06G0221900' => 'rsi', 'Rhsim12G0077100' => 'rsi', 'Rhsim12G0077200' => 'rsi', 'Rhsim12G0133700' => 'rsi', 'Rhsim12G0133800' => 'rsi', 'Rhsim12G0133900' => 'rsi', 'Sabra06G0033800' => 'sbr', 'Sabra08G0069500' => 'sbr', 'Sabra10G0123200' => 'sbr', 'Sabra10G0123300' => 'sbr', 'Sabra12G0036100' => 'sbr', 'Sabra15G0043000' => 'sbr', 'Sabra15G0043100' => 'sbr', 'Sabra15G0044300' => 'sbr', 'Sabra15G0045200' => 'sbr', 'Sabra15G0045300' => 'sbr', 'Sabra15G0046800' => 'sbr', 'Sabra15G0047400' => 'sbr', 'Sabra15G0047500' => 'sbr', 'Sabra15G0049200' => 'sbr', 'Sabra15G0051100' => 'sbr', 'Sabra15G0051200' => 'sbr', 'Sabra15G0051700' => 'sbr', 'Sabra15G0052500' => 'sbr', 'Sabra15G0052700' => 'sbr', 'Sabra15G0054400' => 'sbr', 'Sabra15G0054500' => 'sbr', 'Sabra15G0054600' => 'sbr', 'Sabra15G0061000' => 'sbr', 'Sabra15G0061100' => 'sbr', 'Sabra16G0059900' => 'sbr', 'SalBow1G7002' => 'sbo', 'SalBow1G7203' => 'sbo', 'SalBow1G7816' => 'sbo', 'SalBow3G3255' => 'sbo', 'SalBow5G4037' => 'sbo', 'SalBow5G5599' => 'sbo', 'SalBow6G1671' => 'sbo', 'SalBow6G5729' => 'sbo', 'SalBow7G2104' => 'sbo', 'SalBow7G4850' => 'sbo', 'SalBow8G1191' => 'sbo', 'SalBow8G2364' => 'sbo', 'SalBow8G3104' => 'sbo', 'SalBow8G4432' => 'sbo', 'Sc03g0008430' => 'sci', 'Sc03g0008440' => 'sci', 'Sc03g0008450' => 'sci', 'Sc04g0007780' => 'sci', 'Sc11g0002240' => 'sci', 'Sc12g0007470' => 'sci', 'Sc14g0008030' => 'sci', 'Sc14g0008040' => 'sci', 'Sc19g0006590' => 'sci', 'Sed0001976' => 'sed', 'Sed0007270' => 'sed', 'Sed0014005' => 'sed', 'Sed0018632' => 'sed', 'SEGI_13854' => 'sgi', 'SEGI_20175' => 'sgi', 'SEGI_23129' => 'sgi', 'SEGI_31739' => 'sgi', 'SEGI_36458' => 'sgi', 'SEGI_39686' => 'sgi', 'SGA_v2.0_scaffold105G30393' => 'sas', 'SGA_v2.0_scaffold105G30396' => 'sas', 'SGA_v2.0_scaffold19G08804' => 'sas', 'SGA_v2.0_scaffold215G42305' => 'sas', 'SGA_v2.0_scaffold25G10980' => 'sas', 'SGA_v2.0_scaffold313G48303' => 'sas', 'SMO334G0120' => 'smo', 'SMO347G0340' => 'smo', 'SMO347G0369' => 'smo', 'SMO348G0047' => 'smo', 'Solyc03g118930.2' => 'sly', 'Solyc03g118940.4' => 'sly', 'Solyc04g016180.3' => 'sly', 'Solyc05g012660.3' => 'sly', 'Solyc10g080010.2' => 'sly', 'Sopen03g037870' => 'spe', 'Sopen04g008220' => 'spe', 'Sopen05g007490' => 'spe', 'Sopen10g030620' => 'spe', 'Sp2g14290' => 'spa', 'Sp3g08590' => 'spa', 'Sp3g16290' => 'spa', 'Sp4g23890' => 'spa', 'Sp5g05220' => 'spa', 'TAR371G0916' => 'tar', 'TAR383G0041' => 'tar', 'TAR622G0193' => 'tar', 'TAR622G0702' => 'tar', 'TAR622G0916' => 'tar', 'TAR629G0798' => 'tar', 'TAR633G1579' => 'tar', 'TAR636G0245' => 'tar', 'TAR636G0625' => 'tar', 'TAR643G0004' => 'tar', 'THA.LOC104802078' => 'tha', 'THA.LOC104804701' => 'tha', 'THA.LOC104805945' => 'tha', 'THA.LOC104809839' => 'tha', 'THA.LOC104820372' => 'tha', 'THA.LOC104824432' => 'tha', 'THA.LOC104824501' => 'tha', 'THA.LOC104826894' => 'tha', 'Thecc.02G336900' => 'tca', 'Thecc.02G337000' => 'tca', 'Thecc.03G045500' => 'tca', 'Thecc.03G045600' => 'tca', 'Thecc.03G046100' => 'tca', 'Thecc.05G150400' => 'tca', 'Thecc.07G031300' => 'tca', 'Thhalv10005346m.g' => 'esa', 'Thhalv10005928m.g' => 'esa', 'Thhalv10007530m.g' => 'esa', 'Thhalv10008470m.g' => 'esa', 'Thhalv10011891m.g' => 'esa', 'Thhalv10016562m.g' => 'esa', 'Thhalv10020483m.g' => 'esa', 'Thhalv10020581m.g' => 'esa', 'Thhalv10023777m.g' => 'esa', 'TPR.G12806' => 'tpr', 'TPR.G12946' => 'tpr', 'TPR.G18248' => 'tpr', 'TPR.G22409' => 'tpr', 'TPR.G22490' => 'tpr', 'TPR.G2928' => 'tpr', 'TWI14G0675' => 'twi', 'TWI15G0109' => 'twi', 'TWI39G0250' => 'twi', 'TWI53G1763' => 'twi', 'TWI75G0088' => 'twi', 'TWI81G0185' => 'twi', 'unitig_22.g6047' => 'ugi', 'unitig_22.g6049' => 'ugi', 'unitig_578.g15993' => 'ugi', 'unitig_578.g15994' => 'ugi', 'unitig_749.g13419' => 'ugi', 'vmacro01334' => 'vma', 'vmacro01336' => 'vma', 'vmacro02207' => 'vma', 'vmacro02208' => 'vma', 'vmacro02209' => 'vma', 'vmacro02210' => 'vma', 'vmacro02211' => 'vma', 'vmacro02212' => 'vma', 'vmacro09070' => 'vma', 'vmacro16359' => 'vma', 'vmacro16360' => 'vma', 'vmacro17795' => 'vma', 'VMungo0251G3626' => 'vmu', 'VMungo1127G0094' => 'vmu', 'VMungo1215G1976' => 'vmu', 'VMungo1215G2375' => 'vmu', 'VMungo1383G2216' => 'vmu', 'Zm00001eb027040' => 'zma', 'Zm00001eb109410' => 'zma', 'Zm00001eb110660' => 'zma', 'Zm00001eb125880' => 'zma', 'Zm00001eb125890' => 'zma', 'Zm00001eb125920' => 'zma', 'Zm00001eb125930' => 'zma', 'Zm00001eb125950' => 'zma', 'Zm00001eb125980' => 'zma', 'Zm00001eb127100' => 'zma', 'Zm00001eb136870' => 'zma', 'Zm00001eb144500' => 'zma', 'Zm00001eb188150' => 'zma', 'Zm00001eb203240' => 'zma', 'Zm00001eb209190' => 'zma', 'Zm00001eb227380' => 'zma', 'Zm00001eb229630' => 'zma', 'Zm00001eb231570' => 'zma', 'Zm00001eb241520' => 'zma', 'Zm00001eb270290' => 'zma', 'Zm00001eb277990' => 'zma', 'Zm00001eb287250' => 'zma', 'Zm00001eb329600' => 'zma', 'Zm00001eb334760' => 'zma', 'Zm00001eb334770' => 'zma', 'Zm00001eb334780' => 'zma', 'Zm00001eb335040' => 'zma', 'Zm00001eb341770' => 'zma', 'Zm00001eb350830' => 'zma', 'Zm00001eb355700' => 'zma', 'Zm00001eb362690' => 'zma', 'Zm00001eb382290' => 'zma', 'Zm00001eb382480' => 'zma', 'Zm00001eb382490' => 'zma', 'Zm00001eb382990' => 'zma', 'Zm00001eb383000' => 'zma', 'Zm00001eb426600' => 'zma' ) $gf_id = 'HOM05D000708' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000708' ) $data_identifier = 'HOM05D000708' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 4, 'aag' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 11, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 7, 'cqu' => (int) 11, 'bca' => (int) 15, 'bol' => (int) 7, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 8, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 8, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 10, 'bvu' => (int) 8, 'egr' => (int) 15, 'fan' => (int) 21, 'fve' => (int) 9, 'gma' => (int) 5, 'ghi' => (int) 18, 'gra' => (int) 10, 'vvi' => (int) 4, 'han' => (int) 7, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 9, 'sun' => (int) 9, 'lal' => (int) 5, 'lja' => (int) 3, 'lonja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 12, 'ama' => (int) 5, 'nta' => (int) 8, 'nnu' => (int) 10, 'oeu' => (int) 11, 'osa' => (int) 26, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 2, 'ptr' => (int) 8, 'ppa' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 24, 'qlo' => (int) 13, 'rch' => (int) 11, 'rsi' => (int) 21, 'sbr' => (int) 25, 'sbo' => (int) 14, 'sci' => (int) 9, 'sed' => (int) 4, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 8, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 6, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 37 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb426600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1